track genes2023.16617
longLabel genes2023.16617
shortLabel (001).genes2023.16617
bigDataUrl genes2023.16617.bb
itemRgb on
group Genes
type bigBed 9

track longest_tx2023.16603
longLabel longest_tx2023.16603
shortLabel (002).longest_tx2023.16603
bigDataUrl longest_tx2023.16603.bb
itemRgb on
group Genes
type bigBed 12

track transcripts2023.56514
longLabel transcripts2023.56514
shortLabel (003).transcripts2023.56514
bigDataUrl transcripts2023.56514.bb
itemRgb on
group Genes
type bigBed 12

track TeloPrime_pcr
longLabel TeloPrime_pcr
shortLabel (004).TeloPrime_pcr
bigDataUrl TeloPrime_pcr.bw
maxHeightPixels 75:50:35
color 255,0,0
viewLimits 0:100
group Genes
type bigWig

track SL_pcr
longLabel SL_pcr
shortLabel (005).SL_pcr
bigDataUrl SL_pcr.bw
maxHeightPixels 75:50:35
color 255,0,0
viewLimits 0:100
group Genes
type bigWig

track PS.vcf
longLabel PS.vcf
shortLabel (006).PS.vcf
bigDataUrl ryan/PS.vcf.genotyped.gz
maxHeightPixels 75:50:35
color 0,255,0
group Genes
type vcfTabix

track PG.vcf
longLabel PG.vcf
shortLabel (007).PG.vcf
bigDataUrl ryan/PG.vcf.genotyped.gz
maxHeightPixels 75:50:35
color 0,255,0
group Genes
type vcfTabix

track pu.repeats
longLabel pu.repeats
shortLabel (008).pu.repeats
bigDataUrl pu.repeats.bb
color 0,68,27
group Genes
type bigBed

track germline_testis
longLabel germline_testis
shortLabel (001).germline_testis
bigDataUrl ryan/Testes_I4_S133_L001_v1.11.bw
maxHeightPixels 75:50:35
color 255,0,0
viewLimits 0:200
group Elimination
type bigWig

track somatic_intestine
longLabel somatic_intestine
shortLabel (002).somatic_intestine
bigDataUrl ryan/PS.genome_v1.11.bw
maxHeightPixels 75:50:35
color 0,0,255
viewLimits 0:500
group Elimination
type bigWig

track CBR
longLabel CBR
shortLabel (003).CBR
bigDataUrl ryan/10kb_windows.bw
maxHeightPixels 75:50:35
color 255,0,0
viewLimits 0:3
group Elimination
type bigWig

track eliminated
longLabel eliminated
shortLabel (004).eliminated
bigDataUrl ryan/eliminated.bw
maxHeightPixels 75:50:35
color 255,0,0
viewLimits 0:3
group Elimination
type bigWig

track retained
longLabel retained
shortLabel (005).retained
bigDataUrl ryan/retained.bw
maxHeightPixels 75:50:35
color 0,0,255
viewLimits 0:3
group Elimination
type bigWig

track telomere
longLabel telomere
shortLabel (006).telomere
bigDataUrl ryan/PS_combined.telomere.bw
maxHeightPixels 75:50:35
group Elimination
type bigWig

track germline_pacbio_reads
longLabel germline_pacbio_reads
shortLabel (007).germline_pacbio_reads
bigDataUrl ryan/mashmap_puv1.11_germline.bb
color 0,0,255
group Elimination
type bigBed

track Testes_over35_merge200
longLabel Testes_over35_merge200
shortLabel (008).Testes_over35_merge200
bigDataUrl Testes_over35_merge200.bb
group Elimination
type bigBed 3

track Testes_over35_merge500
longLabel Testes_over35_merge500
shortLabel (009).Testes_over35_merge500
bigDataUrl Testes_over35_merge500.bb
group Elimination
type bigBed 3

track RNA_female.rep1
longLabel RNA_female.rep1
shortLabel (001).RNA_female.rep1
bigDataUrl rna/female_JS2.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_male.rep1
longLabel RNA_male.rep1
shortLabel (002).RNA_male.rep1
bigDataUrl rna/male_JS1.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_young.rep1
longLabel RNA_young.rep1
shortLabel (003).RNA_young.rep1
bigDataUrl rna/young_JS3.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_ovary.rep1
longLabel RNA_ovary.rep1
shortLabel (004).RNA_ovary.rep1
bigDataUrl rna/femaleRP.rep1.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_ovary.rep2
longLabel RNA_ovary.rep2
shortLabel (005).RNA_ovary.rep2
bigDataUrl rna/femaleRP.rep2.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testis.rep1
longLabel RNA_testis.rep1
shortLabel (006).RNA_testis.rep1
bigDataUrl rna/maleRP.rep1.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testis.rep2
longLabel RNA_testis.rep2
shortLabel (007).RNA_testis.rep2
bigDataUrl rna/maleRP.rep2.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM1.rep1
longLabel RNA_testisM1.rep1
shortLabel (008).RNA_testisM1.rep1
bigDataUrl rna/RNA_M1_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM2.rep1
longLabel RNA_testisM2.rep1
shortLabel (009).RNA_testisM2.rep1
bigDataUrl rna/RNA_M2_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM3.rep1
longLabel RNA_testisM3.rep1
shortLabel (010).RNA_testisM3.rep1
bigDataUrl rna/RNA_M3_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM4.rep1
longLabel RNA_testisM4.rep1
shortLabel (011).RNA_testisM4.rep1
bigDataUrl rna/RNA_M4_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM5.rep1
longLabel RNA_testisM5.rep1
shortLabel (012).RNA_testisM5.rep1
bigDataUrl rna/RNA_M5_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM6.rep1
longLabel RNA_testisM6.rep1
shortLabel (013).RNA_testisM6.rep1
bigDataUrl rna/RNA_M6_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM7.rep1
longLabel RNA_testisM7.rep1
shortLabel (014).RNA_testisM7.rep1
bigDataUrl rna/RNA_M7_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_testisM8.rep1
longLabel RNA_testisM8.rep1
shortLabel (015).RNA_testisM8.rep1
bigDataUrl rna/RNA_M8_rep3.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_1cell.rep1
longLabel RNA_1cell.rep1
shortLabel (016).RNA_1cell.rep1
bigDataUrl rna/RNA_1cell_rep1.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_4c16c.rep1
longLabel RNA_4c16c.rep1
shortLabel (017).RNA_4c16c.rep1
bigDataUrl rna/RNA_4c16c_rep1.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_32c64c.rep1
longLabel RNA_32c64c.rep1
shortLabel (018).RNA_32c64c.rep1
bigDataUrl rna/RNA_32c64c_rep1.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_over64c.rep1
longLabel RNA_over64c.rep1
shortLabel (019).RNA_over64c.rep1
bigDataUrl rna/RNA_over64c_rep1.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_embryo.rep1
longLabel RNA_embryo.rep1
shortLabel (020).RNA_embryo.rep1
bigDataUrl rna/embryo.rep1.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_embryo.rep2
longLabel RNA_embryo.rep2
shortLabel (021).RNA_embryo.rep2
bigDataUrl rna/embryo.rep2.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_carcass.rep1
longLabel RNA_carcass.rep1
shortLabel (022).RNA_carcass.rep1
bigDataUrl rna/carcass.rep1.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_carcass.rep2
longLabel RNA_carcass.rep2
shortLabel (023).RNA_carcass.rep2
bigDataUrl rna/carcass.rep2.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_intestine.rep1
longLabel RNA_intestine.rep1
shortLabel (024).RNA_intestine.rep1
bigDataUrl rna/intestine.rep1.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track RNA_intestine.rep2
longLabel RNA_intestine.rep2
shortLabel (025).RNA_intestine.rep2
bigDataUrl rna/intestine.rep2.RNA.bw
maxHeightPixels 75:50:35
color 51,160,44
viewLimits 0:500
group RNAs
type bigWig

track H3K9me3_ovary_rep1
longLabel H3K9me3_ovary_rep1
shortLabel (001).H3K9me3_ovary_rep1
bigDataUrl cnr/cnr_Pui_Female_H3K9me3_rep1.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K9me3_ovary_rep2
longLabel H3K9me3_ovary_rep2
shortLabel (002).H3K9me3_ovary_rep2
bigDataUrl cnr/cnr_Pui_female_H3K9me3_rep2.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K9me3_testis_rep1
longLabel H3K9me3_testis_rep1
shortLabel (003).H3K9me3_testis_rep1
bigDataUrl cnr/cnr_Pui_Male_H3K9me3_rep1.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K9me3_testis_rep2
longLabel H3K9me3_testis_rep2
shortLabel (004).H3K9me3_testis_rep2
bigDataUrl cnr/cnr_Pui_male_H3K9me3_rep2.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K9me3_ovaryR3_rep1
longLabel H3K9me3_ovaryR3_rep1
shortLabel (005).H3K9me3_ovaryR3_rep1
bigDataUrl cnr/cnr_female_oocytes_H3K9me3.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K9me3_maleR3_rep1
longLabel H3K9me3_maleR3_rep1
shortLabel (006).H3K9me3_maleR3_rep1
bigDataUrl cnr/H3K9me3_male_R3_rep1.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K9me3_4hr_rep1
longLabel H3K9me3_4hr_rep1
shortLabel (007).H3K9me3_4hr_rep1
bigDataUrl cnr/Parascaris_4hour_H3K9me3.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K9me3_48hr_rep1
longLabel H3K9me3_48hr_rep1
shortLabel (008).H3K9me3_48hr_rep1
bigDataUrl cnr/Parascaris_48hour_H3K9me3.bw
maxHeightPixels 75:50:35
color 8,48,107
viewLimits 0:100
group CHIP
type bigWig

track H3K4me3_ovary_rep1
longLabel H3K4me3_ovary_rep1
shortLabel (009).H3K4me3_ovary_rep1
bigDataUrl cnr/cnr_PA_female_h3k4me3.bw
maxHeightPixels 75:50:35
color 227,26,28
viewLimits 0:100
group CHIP
type bigWig

track H3K4me3_testis_rep1
longLabel H3K4me3_testis_rep1
shortLabel (010).H3K4me3_testis_rep1
bigDataUrl cnr/cnr_PA_male_h3k4me3.bw
maxHeightPixels 75:50:35
color 227,26,28
viewLimits 0:100
group CHIP
type bigWig

track H3K4me3_ovary_rep2
longLabel H3K4me3_ovary_rep2
shortLabel (011).H3K4me3_ovary_rep2
bigDataUrl cnr/cnr_Pui_Female_H3K4Me3_rep2.bw
maxHeightPixels 75:50:35
color 227,26,28
viewLimits 0:100
group CHIP
type bigWig

track H3K4me3_testis_rep2
longLabel H3K4me3_testis_rep2
shortLabel (012).H3K4me3_testis_rep2
bigDataUrl cnr/cnr_Pui_Male_H3K4Me3_rep2.bw
maxHeightPixels 75:50:35
color 227,26,28
viewLimits 0:100
group CHIP
type bigWig

track H3K4me3_48hr_rep1
longLabel H3K4me3_48hr_rep1
shortLabel (013).H3K4me3_48hr_rep1
bigDataUrl cnr/Parascaris_48hour_H3K4me3.bw
maxHeightPixels 75:50:35
color 227,26,28
viewLimits 0:100
group CHIP
type bigWig

track H3K4me3_L1_rep1
longLabel H3K4me3_L1_rep1
shortLabel (014).H3K4me3_L1_rep1
bigDataUrl cnr/H3K4me3_L1_rep1.bw
maxHeightPixels 75:50:35
color 227,26,28
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_ovary_rep1
longLabel CENP-A_ovary_rep1
shortLabel (015).CENP-A_ovary_rep1
bigDataUrl cnr/cnr_Pui_female_cenpa325_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_ovary_rep2
longLabel CENP-A_ovary_rep2
shortLabel (016).CENP-A_ovary_rep2
bigDataUrl cnr/cnr_Pui_female_cenpa345_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_testis_rep1
longLabel CENP-A_testis_rep1
shortLabel (017).CENP-A_testis_rep1
bigDataUrl cnr/cnr_Pui_male_cenpa325_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_testis_rep2
longLabel CENP-A_testis_rep2
shortLabel (018).CENP-A_testis_rep2
bigDataUrl cnr/cnr_Pui_male_cenpa345_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_4hr_rep1
longLabel CENP-A_4hr_rep1
shortLabel (019).CENP-A_4hr_rep1
bigDataUrl cnr/Parascaris_4hour_CENP-A.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_4hr_rep2
longLabel CENP-A_4hr_rep2
shortLabel (020).CENP-A_4hr_rep2
bigDataUrl cnr/CENP-A_4hr_rep2.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_48hr_rep1
longLabel CENP-A_48hr_rep1
shortLabel (021).CENP-A_48hr_rep1
bigDataUrl cnr/Parascaris_48hour_CENP-A.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_L1_rep1
longLabel CENP-A_L1_rep1
shortLabel (022).CENP-A_L1_rep1
bigDataUrl cnr/CENP-A_L1_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_ovary_rep3
longLabel CENP-A_ovary_rep3
shortLabel (023).CENP-A_ovary_rep3
bigDataUrl cnr/cnr_female_whole_germline_CENP-A.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_ovaryR1_rep1
longLabel CENP-A_ovaryR1_rep1
shortLabel (024).CENP-A_ovaryR1_rep1
bigDataUrl cnr/cnr_female_germinal_CENP-A.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_ovaryR2_rep1
longLabel CENP-A_ovaryR2_rep1
shortLabel (025).CENP-A_ovaryR2_rep1
bigDataUrl cnr/cnr_female_middle_CENP-A.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_ovaryR3_rep1
longLabel CENP-A_ovaryR3_rep1
shortLabel (026).CENP-A_ovaryR3_rep1
bigDataUrl cnr/cnr_female_oocytes_CENP-A.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_testisR1_rep1
longLabel CENP-A_testisR1_rep1
shortLabel (027).CENP-A_testisR1_rep1
bigDataUrl cnr/CENP-A_male_R1_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_testisR2_rep1
longLabel CENP-A_testisR2_rep1
shortLabel (028).CENP-A_testisR2_rep1
bigDataUrl cnr/CENP-A_male_R2_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track CENP-A_testisR3_rep1
longLabel CENP-A_testisR3_rep1
shortLabel (029).CENP-A_testisR3_rep1
bigDataUrl cnr/CENP-A_male_R3_rep1.bw
maxHeightPixels 75:50:35
color 31,120,180
viewLimits 0:100
group CHIP
type bigWig

track cenpa_peaks
longLabel cenpa_peaks
shortLabel (030).cenpa_peaks
bigDataUrl cnr/cenpa_peaks.bb
group CHIP
type bigBed

track cenpa_peaks.500bp_2kb_2kb
longLabel cenpa_peaks.500bp_2kb_2kb
shortLabel (031).cenpa_peaks.500bp_2kb_2kb
bigDataUrl cnr/cenpa_peaks.500bp_2kb_2kb.bb
group CHIP
type bigBed

track cenpa_peaks.500bp2k2k5k5k
longLabel cenpa_peaks.500bp2k2k5k5k
shortLabel (032).cenpa_peaks.500bp2k2k5k5k
bigDataUrl cnr/cenpa_peaks.500bp2k2k5k5k.bb
group CHIP
type bigBed

track cenpa_peaks.10kb
longLabel cenpa_peaks.10kb
shortLabel (033).cenpa_peaks.10kb
bigDataUrl cnr/cenpa_peaks.10kb.bb
itemRgb on
group CHIP
type bigBed 9

track ovary_rpkm5.10kb
longLabel ovary_rpkm5.10kb
shortLabel (034).ovary_rpkm5.10kb
bigDataUrl cnr/ovary_rpkm5.10kb.bb
itemRgb on
group CHIP
type bigBed 9